Stem-loop sequence pti-MIR5479

Accession MI0018997
Description Phaeodactylum tricornutum miR5479 stem-loop
Stem-loop 
cu g     -c       -au      ug      ggccu  -  uau     gaccau    auuaugagacgacgcaucaaucaacucaaucuucaggauacgaacagcuacccacuccccgucguucccugccugg 
  g gcacc  gacgaug   uaagau  gaaaga     uc uc   acacc      ccag                                                                            g
  | |||||  |||||||   ||||||  ||||||     || ||   |||||      ||||                                                                             
  c cgugg  uuguugc   guucug  cuuucu     ag ag   ugugg      gguc                                                                            a
cu g     uu       auu      --      --aac  u  ucc     ------    cuuccgaaaacuucgcuauguuugugcauguuuaguugagcugcccuugucccauagcaacgcacgcuggcuugca
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Mature sequence pti-miR5479

Accession MIMAT0022112
Sequence

11 -  

gacgaugauuaagauuggaaag

 - 32

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Evidence experimental; Solexa [1]

References

1
PMID:21718527 "Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis" Huang A, He L, Wang G BMC Genomics. 12:337(2011).