Stem-loop sequence gma-MIR408a

AccessionMI0018647 (change log)
DescriptionGlycine max miR408a stem-loop
Gene family MIPF0000102; MIR408
Literature search

16 open access papers mention gma-MIR408a
(57 sentences)

Stem-loop 
          gacaa   a      c      a     ga        u     caauauugucaagaaac 
5' gagacag     agc ggggaa aggcag gcaug  uggagcua caaca                 u
   |||||||     ||| |||||| |||||| |||||  |||||||| |||||                 g
3' cucuguc     ucg ucccuu uccguc cguac  gucuuggu guugu                 a
          -----   g      c      a     uc        -     auaaagaggagagugag
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Glycine_max_v2.0; GCA_000004515.3) Overlapping transcripts
chr2: 837414-837546 [+]
intergenic
Database links

Mature sequence gma-miR408a-5p

Accession MIMAT0022992
Sequence

15 -  

caggggaacaggcagagcaug

 - 35

Get sequence
Evidence experimental; Illumina [2]

Mature sequence gma-miR408a-3p

Accession MIMAT0021629
Previous IDsgma-miR408a
Sequence

105 -  

augcacugccucuucccuggc

 - 125

Get sequence
Evidence experimental; Illumina [1-2]

References

1
PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses" Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R BMC Genomics. 12:307(2011).
2
PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).