Stem-loop sequence mtr-MIR399r

Accession

MI0018374 (change log)

Description

Medicago truncatula miR399r stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399r
(22 sentences)

Stem-loop

   --   c   a u      ugac             -    cac   -   uuu 
5'   gug auu c gggcaa    uuuuuuuggcagu aguu   uug auc   c
     ||| ||| | ||||||    ||||||||||||| ||||   ||| |||    
3'   cac uaa g cccguu    gaagaaaccguca ucaa   aac uag   a
   cu   u   c c      --ua             c    aca   g   uag 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 24012653-24012754 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR399r

• mtr-MIR399k: chr8: 24004937-24005030 [-]
• mtr-MIR5246: chr8: 24009245-24009314 [-]
• mtr-MIR399c: chr8: 24010865-24010983 [-]
• mtr-MIR399r: chr8: 24012653-24012754 [+]
• mtr-MIR399k: chr8: 24176682-24176775 [-]
• mtr-MIR5246: chr8: 24180980-24181049 [-]
• mtr-MIR399c: chr8: 24182595-24182713 [-]

Database links

• miRBase Tracker:MI0018374

Mature sequence mtr-miR399r

• Accession: MIMAT0021271
• Sequence: 72 - ugccaaagaagauuugccccg - 92
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).