Stem-loop sequence mtr-MIR2592bk

Accession

MI0018336 (change log)

Description

Medicago truncatula miR2592bk stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bk
(2 sentences)

Stem-loop

          u               u      ug               c     a    -ugu        aa     g          -     a 
5' ccaauau cgacuggcauuccca uguucc  ucaaaagauuaaauu uuguu ggcu    uuaaauga  guauu aagugucaag gaaug a
   ||||||| ||||||||||||||| ||||||  ||||||||||||||| ||||| ||||    ||||||||  ||||| |||||||||| ||||| c
3' gguuaua gcuggccguaagggu acaagg  aguuuucuaauuuaa aacaa cuga    aauuuacu  cauaa uuuacaguuu cuuac c
          u               u      ua               c     c    cccu        ac     g          u     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 32783558-32783748 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018336

Mature sequence mtr-miR2592bk

• Accession: MIMAT0021231
• Sequence: 161 - uggaacauugggaaugccggu - 181
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).