Stem-loop sequence mtr-MIR2592bi

Accession

MI0018334 (change log)

Description

Medicago truncatula miR2592bi stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bi
(2 sentences)

Stem-loop

          u     c         u   c  ug                       -ucc           a      g      -c        a 
5' ccaauau cgacc gcauuccca ugu cc  ucaaaagauuaaauucuuguuag    gguuuaaauga gguauu aagugu  aaggaaug a
   ||||||| ||||| ||||||||| ||| ||  |||||||||||||||||||||||    ||||||||||| |||||| ||||||  |||||||| c
3' gguuaua gcugg cguaagggu aca gg  aguuuucuaauuuaagaacaauc    ccaaauuuacu ccauaa uucaca  uuucuuac c
          u     c         u   a  ua                       caaa           g      a      cu        u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): AC225507.19: 185937-186127 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018334

Mature sequence mtr-miR2592bi

• Accession: MIMAT0021229
• Sequence: 161 - uggaacauugggaaugccggu - 181
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).