Stem-loop sequence mtr-MIR2592aw

Accession

MI0018300 (change log)

Description

Medicago truncatula miR2592aw stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592aw
(2 sentences)

Stem-loop

   --      c      c   a                              u            u      c         -  g        aa     -    c  g  -      a 
5'   accugc aaacaa agg cucgagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuaggc ug uuuagaug  gguau uagg gu aa ggaaug a
     |||||| |||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||  ||||| |||| || || |||||| c
3'   uggacg uuuguu ucc gaguucguaaagugggccguaaguacaaaa ggaaacuuuucu auuuaa aacaauccg ac aaaucugc  ccaua guuc cg uu cuuuac c
   uu      u      a   c                              -            u      a         c  g        aa     a    a  g  g      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): AC225526.13: 51752-51984 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018300

Mature sequence mtr-miR2592aw

• Accession: MIMAT0021194
• Sequence: 75 - aggcugguuuagaugaaggua - 95
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).