Stem-loop sequence mtr-MIR2592ap

Accession

MI0018293 (change log)

Description

Medicago truncatula miR2592ap stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592ap
(2 sentences)

Stem-loop

   u   -gguaag                            c  c    a        -        u c        cag               cu               u            u      cuc        - g         a     -          -      a 
5'  uag       gugcauucuaacuacaacaauugucuua cu ugaa ugggguaa uucaaauu g caaacggc   gacucaagcauuucg  cggcauucauguuuu ccuuugaaaaga uaaauu   guuaggcu g uuuagauga gguau uaagugucaa ggaaug a
    |||       |||||||||||||||||||||||||||| || |||| |||||||| |||||||| | ||||||||   |||||||||||||||  ||||||||||||||| |||||||||||| ||||||   |||||||| | ||||||||| ||||| |||||||||| |||||| c
3'  auc       cacguaagguugauguuguuaacagaau ga acuu aucccauu aaguuuga c guuuguug   cugaguucguaaagc  gcuguaaguacaaaa ggaaacuuuucu auuuaa   caauccga c aaaucuacu ccaua guucacgguu cuuuac c
   -   aacuuua                            a  a    -        u        c a        -ua               ag               -            u      caa        a g         a     a          g      u 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (JCVI_Mt3.5.2)	Overlapping transcripts
AC146550.40: 50348-50699 [-]	intergenic
AC235665.4: 107244-107595 [+]	intergenic

Database links

• miRBase Tracker:MI0018293

Mature sequence mtr-miR2592ap

• Accession: MIMAT0021187
• Sequence: 136 - aggcugguuuagaugaaggua - 156
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).