Stem-loop sequence mtr-MIR2592an

Accession

MI0018276 (change log)

Description

Medicago truncatula miR2592an stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592an
(2 sentences)

Stem-loop

           c                                         u            u      c         -  g         a     -       g  -      a 
5' aaaccugc aaacaacaggacucgagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuaggc ug uuuagaugu gguau uaagugu aa ggaaug a
   |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||| ||||| ||||||| || |||||| c
3' uuuggacg uuuguuguccugaguucguaaagugggccguaaguacaaaa ggaaacuuuucu auuuaa aacaauccg ac aaaucugcg ccaua guucacg uu cuuuac c
           u                                         -            u      a         c  g         a     a       g  g      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 28800456-28800690 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018276

Mature sequence mtr-miR2592an

• Accession: MIMAT0021170
• Sequence: 205 - aaaugcuugaguccuguuguu - 225
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).