Stem-loop sequence mtr-MIR2592ad

Accession

MI0018266 (change log)

Description

Medicago truncatula miR2592ad stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592ad
(2 sentences)

Stem-loop

   ---      -uauc       g     a  cc    aaca          -              -  a          c              uu a   c   ccuacu    a  u 
5'    gaugcu     agauguu gaguc ug  guuu    aguuugaauu accccauucaaagg aa acaauuguug aguuggaaggugca  c uuc gua      aacg uc u
      ||||||     ||||||| ||||| ||  ||||    |||||||||| |||||||||||||| || |||||||||| ||||||||||||||  | ||| |||      |||| || u
3'    uuacgg     uuuacga cucag ac  caaa    ucaaacuuaa ugggguaaguuucc uu uguuaacaac ucaaccuuccaugu  g aag cau      uugc ag u
   uac      cccgc       a     g  aa    ccgg          a              a  g          a              uu c   c   ----au    -  g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 26559227-26559456 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018266

Mature sequence mtr-miR2592ad

• Accession: MIMAT0021160
• Sequence: 198 - caacaggacucaagcauuucgc - 219
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).