Stem-loop sequence mtr-MIR5205c

Accession

MI0018242 (change log)

Description

Medicago truncatula miR5205c stem-loop

Literature search

1 open access papers mention mtr-MIR5205c
(1 sentences)

Stem-loop

   -----aaaa    -cu      u           uaguauugauu          -u   gaucug    -  -u  cau   u 
5'          gggu   uauaau agggacggagg           ggacggcuac  gau      aaug ca  ga   gaa a
            ||||   |||||| |||||||||||           ||||||||||  |||      |||| ||  ||   ||| c
3'          cccg   guauua uuucuguuucu           uuugccggug  cua      uuac gu  cu   uuu a
   cucccuuug    auu      u           ----------c          uc   -aacaa    a  uu  -uu   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 8755342-8755491 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018242

Mature sequence mtr-miR5205c

• Accession: MIMAT0021135
• Sequence: 9 - cuuauaauuagggacggagguagu - 32
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).