Stem-loop sequence ssp-MIR156

AccessionMI0018191
DescriptionSaccharum sp. miR156 stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

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Stem-loop
   ----------------------------------------------------------------------------------------------------------------------------------------aggcugacagaagagagugagcacacauggugccuuucuugcaugaugaacgaucgagaggu     -cuc       ---  c         u    c        -  -guu       -     cgaucgca    -c   cga         cguucucugucaaucucucccauggugauauuuauuugcuugucugcguguucucu 
5'                                                                                                                                                                                                       ucaug    gaagcua   ug gugcucacu cucu ucugucag cc    agaacuc ucucu        cccu  ccu   ucucucuuu                                                        u
                                                                                                                                                                                                         |||||    |||||||   || ||||||||| |||| |||||||| ||    ||||||| |||||        ||||  |||   |||||||||                                                        u
3'                                                                                                                                                                                                       aguac    cuuuggu   ac cacgaguga gaga agacaguu gg    uuuuggg agagg        ggga  gga   ggagagaag                                                        c
   uauccuccuccuauaugggcuguaacucuagguguacaauuaguauaaaucgaagauauuaguauauuaacguguucucuagcuagacacagguucunugaaguucccgagcuuguauaucggcgccunuggucucucuacccggacuacucaccgacugucuaucucucacucgugcgugucgagggucguaccgug     nauu       ggc  a         -    -        u  aagu       u     --------    ac   --a         uccguuucacguuuuuuuguggauuccguggcacuugaccagcacagacacgaauc 
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Confidence
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Mature sequence ssp-miR156

Accession MIMAT0020291
Sequence

304 - 

ugacagaagagagugagcaca

 - 324

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Evidence not experimental

References

1
PMID:21092324 "Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane" Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT BMC Plant Biol. 10:260(2010).