Stem-loop sequence hsa-mir-5196

Accession

MI0018175

Description

Homo sapiens miR-5196 stem-loop

Stem-loop

u  ga     ccu     -g  aga    a    a            ug  ---g   a 
 cu  ggaga   gggcu  uc   ggcc ggga ggggacgagggu  gg    aac g
 ||  |||||   |||||  ||   |||| |||| ||||||||||||  ||    ||| g
 ga  ucucu   cccgg  ag   uugg cccu ccucugcuccua  uc    uug u
g  ag     ccc     ga  --a    a    c            cu  acga   g 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 35836416-35836530 [+]
• Overlapping transcripts:

  sense

  ENST00000341773 ; CD22-203; intron 9

  ENST00000536635 ; CD22-205; intron 10

  ENST00000270311 ; CD22-202; intron 10

  ENST00000419549 ; CD22-204; intron 10

  ENST00000341773 ; CD22-203; 3'UTR (exon 10)

  ENST00000270311 ; CD22-202; intron 10

  ENST00000341773 ; CD22-203; 3'UTR (exon 10)

  ENST00000270311 ; CD22-202; intron 10

  ENST00000085219 ; CD22-201; intron 11

  ENST00000544992 ; CD22-206; intron 11

  ENST00000536635 ; CD22-205; 3'UTR (exon 11)

  ENST00000544992 ; CD22-206; intron 11

  ENST00000419549 ; CD22-204; 3'UTR (exon 11)

  ENST00000536635 ; CD22-205; 3'UTR (exon 11)

  ENST00000544992 ; CD22-206; intron 11

  ENST00000419549 ; CD22-204; 3'UTR (exon 11)

  ENST00000085219 ; CD22-201; 3'UTR (exon 12)

  ENST00000085219 ; CD22-201; 3'UTR (exon 12)

Mature sequence hsa-miR-5196-5p

• Accession: MIMAT0021128
• Sequence: 29 - agggaaggggacgaggguuggg - 50
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5196-5p
  • MIRDB:hsa-miR-5196-5p
  • TARGETMINER:hsa-miR-5196-5p

Mature sequence hsa-miR-5196-3p

• Accession: MIMAT0021129
• Sequence: 69 - ucauccucgucucccucccag - 89
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5196-3p
  • MIRDB:hsa-miR-5196-3p
  • TARGETMINER:hsa-miR-5196-3p

References

1. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).