Stem-loop sequence hsa-mir-5193

Accession

MI0018172

Description

Homo sapiens miR-5193 stem-loop

Stem-loop

---------ccuaggaaaggcugcu  u             guu        gua   a 
                         gg aacugggaugggg   ggggggag   aga g
                         || |||||||||||||   ||||||||   |||  
                         cc uugacccuacucc   uccuccuc   ucu u
aggguucuccaggugaaguccacua  -             auc        -ag   c 

Deep sequencing

6 reads, 5 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 49843570-49843678 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000350504 ; UBA7-002; exon 1

  OTTHUMT00000350504 ; UBA7-002; exon 1

  OTTHUMT00000350504 ; UBA7-002; exon 1

  OTTHUMT00000350503 ; UBA7-001; exon 22

  OTTHUMT00000350503 ; UBA7-001; exon 22

  ENST00000497908 ; UBA7-002; exon 1

  ENST00000497908 ; UBA7-002; exon 1

  ENST00000497908 ; UBA7-002; exon 1

  ENST00000333486 ; UBA7-001; exon 22

  ENST00000333486 ; UBA7-001; exon 22

Mature sequence hsa-miR-5193

• Accession: MIMAT0021124
• Sequence: 60 - uccuccucuaccucaucccagu - 81
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5193
  • MIRDB:hsa-miR-5193
  • TARGETMINER:hsa-miR-5193

References

1. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).