Stem-loop sequence hsa-mir-5189

Accession

MI0018168

Description

Homo sapiens miR-5189 stem-loop

Stem-loop

---  c  g  uu  a      u  -cu        a a     a   a    - ugg    
   gg cc cc  uu ggggcc cg   gucugggc c ggcgg ugg cagg c   ccu 
   || || ||  || |||||| ||   |||||||| | ||||| ||| |||| |   || c
   cc gg gg  ga cuccgg gc   cagacccg g cugcc acc gucc g   ggu 
gga  a  -  uu  -      u  acc        a a     a   -    a -ua    

Deep sequencing

10 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr16: 88535326-88535439 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000422270 ; ZFPM1-001; intron 1

  OTTHUMT00000422378 ; ZFPM1-005; intron 1

  OTTHUMT00000422379 ; ZFPM1-006; intron 1

  OTTHUMT00000422271 ; ZFPM1-002; intron 1

  OTTHUMT00000422272 ; ZFPM1-003; intron 1

  OTTHUMT00000422270 ; ZFPM1-001; intron 1

  OTTHUMT00000422378 ; ZFPM1-005; intron 1

  OTTHUMT00000422379 ; ZFPM1-006; intron 1

  OTTHUMT00000422271 ; ZFPM1-002; intron 1

  OTTHUMT00000422272 ; ZFPM1-003; intron 1

  ENST00000319555 ; ZFPM1-201; intron 1

  ENST00000319555 ; ZFPM1-001; intron 1

  ENST00000562417 ; ZFPM1-005; intron 1

  ENST00000569086 ; ZFPM1-006; intron 1

  ENST00000563351 ; ZFPM1-002; intron 1

  ENST00000562437 ; ZFPM1-003; intron 1

  ENST00000319555 ; ZFPM1-001; intron 1

  ENST00000562417 ; ZFPM1-005; intron 1

  ENST00000569086 ; ZFPM1-006; intron 1

  ENST00000563351 ; ZFPM1-002; intron 1

  ENST00000562437 ; ZFPM1-003; intron 1

Mature sequence hsa-miR-5189

• Accession: MIMAT0021120
• Sequence: 26 - ucugggcacaggcggauggacagg - 49
• Deep sequencing: 10 reads, 4 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5189
  • MIRDB:hsa-miR-5189
  • TARGETMINER:hsa-miR-5189

References

1. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).