Stem-loop sequence hsa-mir-5187

Accession MI0018166
Description Homo sapiens miR-5187 stem-loop
Stem-loop 
ga   agg u    u   -     ga       c    au 
  cua   g ggga gag ggauu  aguggag agga  g
  |||   | |||| ||| |||||  ||||||| ||||   
  ggu   c uccu uuc ccuaa  ucaccuc uuuu  c
--   gga -    u   u     -g       -    cg
Get sequence
Deep sequencing
98 reads, 15 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr1: 161196976-161197051 [+]
sense
OTTHUMT00000083031 ; TOMM40L-003; intron 2
OTTHUMT00000083030 ; TOMM40L-002; intron 2
OTTHUMT00000083031 ; TOMM40L-003; intron 2
OTTHUMT00000083031 ; TOMM40L-003; intron 2
OTTHUMT00000083029 ; TOMM40L-001; intron 3
OTTHUMT00000083032 ; TOMM40L-004; intron 3
OTTHUMT00000083033 ; TOMM40L-005; intron 3
OTTHUMT00000083034 ; TOMM40L-006; intron 3
OTTHUMT00000083034 ; TOMM40L-006; intron 3
OTTHUMT00000083030 ; TOMM40L-002; 3'UTR (exon 3)
OTTHUMT00000083034 ; TOMM40L-006; intron 3
OTTHUMT00000083030 ; TOMM40L-002; 3'UTR (exon 3)
OTTHUMT00000083029 ; TOMM40L-001; 3'UTR (exon 4)
OTTHUMT00000083032 ; TOMM40L-004; exon 4
OTTHUMT00000083033 ; TOMM40L-005; exon 4
OTTHUMT00000083029 ; TOMM40L-001; 3'UTR (exon 4)
OTTHUMT00000083032 ; TOMM40L-004; exon 4
OTTHUMT00000083033 ; TOMM40L-005; exon 4
ENST00000474486 ; TOMM40L-003; intron 2
ENST00000367987 ; TOMM40L-002; intron 2
ENST00000542686 ; TOMM40L-201; intron 2
ENST00000474486 ; TOMM40L-003; intron 2
ENST00000474486 ; TOMM40L-003; intron 2
ENST00000367988 ; TOMM40L-001; intron 3
ENST00000470426 ; TOMM40L-004; intron 3
ENST00000465512 ; TOMM40L-005; intron 3
ENST00000492482 ; TOMM40L-006; intron 3
ENST00000545897 ; TOMM40L-202; intron 3
ENST00000492482 ; TOMM40L-006; intron 3
ENST00000367987 ; TOMM40L-002; 3'UTR (exon 3)
ENST00000542686 ; TOMM40L-201; 3'UTR (exon 3)
ENST00000492482 ; TOMM40L-006; intron 3
ENST00000367987 ; TOMM40L-002; 3'UTR (exon 3)
ENST00000367988 ; TOMM40L-001; 3'UTR (exon 4)
ENST00000470426 ; TOMM40L-004; exon 4
ENST00000465512 ; TOMM40L-005; exon 4
ENST00000545897 ; TOMM40L-202; 3'UTR (exon 4)
ENST00000367988 ; TOMM40L-001; 3'UTR (exon 4)
ENST00000470426 ; TOMM40L-004; exon 4
ENST00000465512 ; TOMM40L-005; exon 4
ENST00000545897 ; TOMM40L-201; 3'UTR (exon 4)

Mature sequence hsa-miR-5187-5p

Accession MIMAT0021117
Sequence

10 -  

ugggaugagggauugaagugga

 - 31

Get sequence
Deep sequencing 98 reads, 15 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

Mature sequence hsa-miR-5187-3p

Accession MIMAT0021118
Sequence

52 -  

acugaauccucuuuuccucag

 - 72

Get sequence
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).
2
PMID:21807764 "Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome" Joyce CE, Zhou X, Xia J, Ryan C, Thrash B, Menter A, Zhang W, Bowcock AM Hum Mol Genet. 20:4025-4040(2011).