Stem-loop sequence osa-MIR5145

Accession

MI0018057 (change log)

Description

Oryza sativa miR5145 stem-loop

Stem-loop

   --cca         a    uga        uuaaaauuaaaau  g 
5'      ccuguuugg uucu   gggcuaau             gu a
        ||||||||| ||||   ||||||||             ||  
3'      ggacaaacc aaga   ccugauua             cg g
   cgccg         -    -ua        --------caaau  a 

Deep sequencing

378 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 40622637-40622718 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018057

Mature sequence osa-miR5145

• Accession: MIMAT0021090
• Sequence: 3 - accuguuuggauucuugagggcua - 26
• Deep sequencing: 340 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000335BA0_39947

References

1. PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus" Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D RNA Biol. 8:538-547(2011).