Stem-loop sequence osa-MIR5144

Accession

MI0018056 (change log)

Description

Oryza sativa miR5144 stem-loop

Literature search

1 open access papers mention osa-MIR5144
(1 sentences)

Stem-loop

           a                  a                c    g gacgucuucuucuucccauugaaggucucggucuucuccuucagcuccugcggcaugggacgacgagguggagcucgaguccucgaggaacuugugccgcaugggacgcccaccaagaaagccccccucgucgccccgccaccgccaccgccgccgccg 
5' uccauauu uucuucuugugcugcuga gagacucaccgaccuc ggcg c                                                                                                                                                               a
   |||||||| |||||||||||||||||| |||||||||||||||| |||| |                                                                                                                                                               a
3' agguauaa aagaagaacacgacgacu cucugaguggcuggag ccgu g                                                                                                                                                               c
           g                  c                c    a uggccuuagccugagaaccagcaguaggaguaguaguagccugccuccguguaagaacaaccggacuucgcgacccaagccguggccgucgcggagcagcagugaccuuagccugaaaaccggcaguagccuuagucuuagucuaagucugagaaccaa 

Deep sequencing

528 reads, 250 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 25326388-25326810 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018056

Mature sequence osa-miR5144-5p

• Accession: MIMAT0021088
• Sequence: 13 - uucuugugcugcugaagagac - 33
• Deep sequencing: 485 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004AE755_39947

Mature sequence osa-miR5144-3p

• Accession: MIMAT0021089
• Sequence: 392 - ucuccucagcagcacaagaag - 412
• Deep sequencing: 17 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003A4BF2_39947

References

1. PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus" Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D RNA Biol. 8:538-547(2011).