Stem-loop sequence hsa-mir-1273f

Accession

MI0018002

Description

Homo sapiens miR-1273f stem-loop

Gene family

MIPF0000579; mir-1273

Stem-loop

aggugg        -   --ga   ug  aga   a  u      ga  -  a 
      gaggauug cuu    gcc  gg   ugg gg ugcagu  gc ug g
      |||||||| |||    |||  ||   ||| || ||||||  || ||  
      uuccugac gag    cgg  cc   acc cc acguca  cg ac a
-cucug        u   auac   gu  --g   -  c      -a  c  u 

Deep sequencing

105 reads, 30 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 53394346-53394444 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000024740 ; SCP2-001; intron 1

  OTTHUMT00000387557 ; SCP2-009; intron 1

  OTTHUMT00000387558 ; SCP2-010; intron 1

  OTTHUMT00000387559 ; SCP2-007; intron 1

  OTTHUMT00000387560 ; SCP2-011; intron 1

  OTTHUMT00000024743 ; SCP2-004; intron 1

  OTTHUMT00000387561 ; SCP2-012; intron 1

  OTTHUMT00000024740 ; SCP2-001; intron 1

  OTTHUMT00000387557 ; SCP2-009; intron 1

  OTTHUMT00000387558 ; SCP2-010; intron 1

  OTTHUMT00000387559 ; SCP2-007; intron 1

  OTTHUMT00000387560 ; SCP2-011; intron 1

  OTTHUMT00000024743 ; SCP2-004; intron 1

  OTTHUMT00000387561 ; SCP2-012; intron 1

  OTTHUMT00000024740 ; SCP2-001; intron 1

  OTTHUMT00000387557 ; SCP2-009; intron 1

  OTTHUMT00000387558 ; SCP2-010; intron 1

  OTTHUMT00000387559 ; SCP2-007; intron 1

  OTTHUMT00000387560 ; SCP2-011; intron 1

  OTTHUMT00000024743 ; SCP2-004; intron 1

  OTTHUMT00000387561 ; SCP2-012; intron 1

  ENST00000371514 ; SCP2-001; intron 1

  ENST00000478631 ; SCP2-009; intron 1

  ENST00000528311 ; SCP2-010; intron 1

  ENST00000371509 ; SCP2-007; intron 1

  ENST00000407246 ; SCP2-011; intron 1

  ENST00000371513 ; SCP2-004; intron 1

  ENST00000528809 ; SCP2-012; intron 1

  ENST00000371514 ; SCP2-001; intron 1

  ENST00000478631 ; SCP2-009; intron 1

  ENST00000528311 ; SCP2-010; intron 1

  ENST00000371509 ; SCP2-007; intron 1

  ENST00000407246 ; SCP2-011; intron 1

  ENST00000371513 ; SCP2-004; intron 1

  ENST00000528809 ; SCP2-012; intron 1

  ENST00000371514 ; SCP2-001; intron 1

  ENST00000478631 ; SCP2-009; intron 1

  ENST00000528311 ; SCP2-010; intron 1

  ENST00000371509 ; SCP2-007; intron 1

  ENST00000407246 ; SCP2-011; intron 1

  ENST00000371513 ; SCP2-004; intron 1

  ENST00000528809 ; SCP2-012; intron 1

Clustered miRNAs

< 10kb from hsa-mir-1273f

• hsa-mir-1273f: chr1: 53394346-53394444 [+]
• hsa-mir-5095: chr1: 53400602-53400689 [+]

Database links

• ENTREZGENE: 100616156;MIR1273F

Mature sequence hsa-miR-1273f

• Accession: MIMAT0020601
• Sequence: 25 - ggagauggagguugcagug - 43
• Deep sequencing: 49 reads, 23 experiments
• Evidence: experimental; RTPCR [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1273f
  • MIRDB:hsa-miR-1273f
  • TARGETMINER:hsa-miR-1273f

References

1. PMID:21377523 "Identification and analysis of novel microRNAs from fragile sites of human cervical cancer: computational and experimental approach" Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR Genomics. 97:333-340(2011).