Stem-loop sequence hsa-mir-5095

Accession

MI0018001

Symbol

HGNC:MIR5095

Description

Homo sapiens miR-5095 stem-loop

Stem-loop

   -                  a       g     c ua  -   u 
5'  cugggauuacaggcguga ccaccgc cccgg c  ac uuu a
    |||||||||||||||||| ||||||| ||||| |  || |||  
3'  gacccuaauguccgcacu gguggcg gggcc g  ug aaa a
   c                  c       a     c gc  c   g 

Deep sequencing

717 reads, 824 reads per million, 61 experiments

Confidence

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38): chr1: 52934930-52935017 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000022473 ; ZCCHC11-012; intron 13

  OTTHUMT00000022463 ; ZCCHC11-002; intron 13

  OTTHUMT00000022466 ; ZCCHC11-005; intron 14

  OTTHUMT00000022462 ; ZCCHC11-001; intron 14

  OTTHUMT00000387710 ; ZCCHC11-017; intron 14

  ENST00000528642 ; ZCCHC11-012; intron 13

  ENST00000371541 ; ZCCHC11-002; intron 13

  ENST00000257177 ; ZCCHC11-005; intron 14

  ENST00000371544 ; ZCCHC11-001; intron 14

  ENST00000484723 ; ZCCHC11-017; intron 14

Clustered miRNAs

< 10kb from hsa-mir-5095

• hsa-mir-1273f: chr1: 52928674-52928772 [+]
• hsa-mir-5095: chr1: 52934930-52935017 [+]
• hsa-mir-1273g: chr1: 52940314-52940413 [+]

Database links

• MIRBASE-TRACKER:MI0018001
• ENTREZGENE: 100616458;MIR5095
• HGNC: 41849;MIR5095

Mature sequence hsa-miR-5095

• Accession: MIMAT0020600
• Sequence: 7 - uuacaggcgugaaccaccgcg - 27
• Deep sequencing: 10 reads, 8 experiments
• Evidence: experimental; RTPCR [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5095
  • MIRDB:hsa-miR-5095
  • TARGETMINER:hsa-miR-5095
  • TARGETSCAN-VERT:hsa-miR-5095

References

1. PMID:21377523 "Identification and analysis of novel microRNAs from fragile sites of human cervical cancer: computational and experimental approach" Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR Genomics. 97:333-340(2011).