Stem-loop sequence hsa-mir-5090

Accession

MI0017979

Description

Homo sapiens miR-5090 stem-loop

Stem-loop

-     --   ----accc        uu   g     u  aaag 
 ucuga  ggu        ggggcaga  ggu uaggg gc    c
 |||||  |||        ||||||||  ||| ||||| ||    c
 ggacu  ccg        ccccgucu  ccg auccc cg    u
a     gu   accucaac        -u   a     c  cccg 

Deep sequencing

9 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr7: 102106189-102106273 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000349493 ; LRWD1-001; intron 1

  OTTHUMT00000349496 ; LRWD1-004; intron 1

  OTTHUMT00000349494 ; LRWD1-002; intron 1

  OTTHUMT00000349499 ; LRWD1-007; intron 1

  OTTHUMT00000349495 ; LRWD1-003; intron 2

  OTTHUMT00000349497 ; LRWD1-005; exon 2

  OTTHUMT00000349493 ; LRWD1-001; 3'UTR (exon 2)

  OTTHUMT00000349496 ; LRWD1-004; exon 2

  OTTHUMT00000349494 ; LRWD1-002; exon 2

  OTTHUMT00000349497 ; LRWD1-005; exon 2

  OTTHUMT00000349499 ; LRWD1-007; 3'UTR (exon 2)

  OTTHUMT00000349493 ; LRWD1-001; 3'UTR (exon 2)

  OTTHUMT00000349496 ; LRWD1-004; exon 2

  OTTHUMT00000349494 ; LRWD1-002; exon 2

  OTTHUMT00000349497 ; LRWD1-005; exon 2

  OTTHUMT00000349499 ; LRWD1-007; 3'UTR (exon 2)

  OTTHUMT00000349495 ; LRWD1-003; exon 3

  OTTHUMT00000349495 ; LRWD1-003; exon 3

  ENST00000292616 ; LRWD1-001; intron 1

  ENST00000463739 ; LRWD1-004; intron 1

  ENST00000473880 ; LRWD1-002; intron 1

  ENST00000485808 ; LRWD1-007; intron 1

  ENST00000464107 ; LRWD1-003; intron 2

  ENST00000476270 ; LRWD1-005; exon 2

  ENST00000292616 ; LRWD1-001; 3'UTR (exon 2)

  ENST00000463739 ; LRWD1-004; exon 2

  ENST00000473880 ; LRWD1-002; exon 2

  ENST00000476270 ; LRWD1-005; exon 2

  ENST00000485808 ; LRWD1-007; 3'UTR (exon 2)

  ENST00000292616 ; LRWD1-001; 3'UTR (exon 2)

  ENST00000463739 ; LRWD1-004; exon 2

  ENST00000473880 ; LRWD1-002; exon 2

  ENST00000476270 ; LRWD1-005; exon 2

  ENST00000485808 ; LRWD1-007; 3'UTR (exon 2)

  ENST00000464107 ; LRWD1-003; exon 3

  ENST00000464107 ; LRWD1-003; exon 3

Clustered miRNAs

< 10kb from hsa-mir-5090

• hsa-mir-5090: chr7: 102106189-102106273 [+]
• hsa-mir-4467: chr7: 102111916-102111978 [+]

Mature sequence hsa-miR-5090

• Accession: MIMAT0021082
• Sequence: 11 - ccggggcagauugguguagggug - 33
• Deep sequencing: 9 reads, 4 experiments
• Evidence: experimental; qPCR [1], Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5090
  • MIRDB:hsa-miR-5090
  • TARGETMINER:hsa-miR-5090

References

1. PMID:21785231 "Detection of novel human MiRNAs responding to X-ray irradiation" Ding N, Wu X, He J, Chang L, Hu W, Li W, Wang J, Wang T, Zhou G J Radiat Res. 52:425-432(2011).