Stem-loop sequence osa-MIR5077

AccessionMI0017965 (change log)
DescriptionOryza sativa miR5077 stem-loop
Literature search

2 open access papers mention osa-MIR5077
(2 sentences)

Stem-loop
   ugccuuu      uu g      - uu a  -ag  ag   g   g 
5'        ucguug  c cgucgg g  c cc   cu  gug uuc c
          ||||||  | |||||| |  | ||   ||  ||| ||| c
3'        agcaac  g gcggcc c  g gg   gg  cau aag a
   cagcagu      cu a      g ug -  gaa  -a   g   u 
Get sequence
Deep sequencing
196 reads, 100 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr3: 14094752-14094842 [+]
intergenic
Database links

Mature sequence osa-miR5077

Accession MIMAT0020574
Sequence

13 - 

guucgcgucggguucacca

 - 31

Get sequence
Deep sequencing195 reads, 2 experiments
Evidence not experimental

References

1
PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads" Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U BMC Genomics. 12:129(2011).