Stem-loop sequence bdi-MIR5065

Accession MI0017963
Description Brachypodium distachyon miR5065 stem-loop
Stem-loop 
-     aa   u   c    -    uau   -cu     - uu      u  caguguacaagacaaauugaaucgugauuuaaauaugcaguccuau 
 ugaaa  ggc agg aauu cacu   aca   augau a  cagaac ag                                              a
 |||||  ||| ||| |||| ||||   |||   ||||| |  |||||| ||                                               
 acuuu  ccg ucu uuga guga   ugu   uacua u  guuuug uc                                              a
u     ga   -   c    u    --u   uuu     c uc      u  cuugcucuuucuugaucucaagaucccacaguuaaaucaggauuaa
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Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Coordinates (v1.0) Overlapping transcripts
chr3: 59067940-59068130 [-]
intergenic

Mature sequence bdi-miR5065

Accession MIMAT0020572
Sequence

11 -  

uaggcaauucacuuauacacu

 - 31

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Evidence not experimental

References

1
PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads" Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U BMC Genomics. 12:129(2011).