Stem-loop sequence bdi-MIR5055

Accession MI0017944
Description Brachypodium distachyon miR5055 stem-loop
Stem-loop 
gguu    --     c    c   gc    -    gcguugcaaggagcagaguauuuaaccugcgccgacaguuguuaaacaggcaaggugggacuaaaaagggugucgccuacuguacug 
    acaa  gcucu gcug uga  ucgg cguu                                                                                       g
    ||||  ||||| |||| |||  |||| ||||                                                                                       c
    uguu  cggga cgac gcu  agcu gcaa                                                                                       u
--uu    ac     -    c   au    u    aacugggcacgggucaaaauauuuguccguucaggucauacgguugccgggucgacgccacgcggugugucgggucaacgguagcgg
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Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Coordinates (v1.0) Overlapping transcripts
chr3: 13969508-13969748 [+]
intergenic

Mature sequence bdi-miR5055

Accession MIMAT0020553
Sequence

11 -  

ucucgcugcugagcucggcgu

 - 31

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Evidence not experimental

References

1
PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads" Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U BMC Genomics. 12:129(2011).