Stem-loop sequence ath-MIR5028

Accession MI0017898
Description Arabidopsis thaliana miR5028 stem-loop
Stem-loop 
    guugccgu     guuc  -   -    u       a        uau c       aa  c    c    aa   -      a    c 
cguc        aacuc    gc cug agga aaugauc auuggguu   g uagaguu  au gggu uuga  aga gaagga guug a
||||        |||||    || ||| |||| ||||||| ||||||||   | |||||||  || |||| ||||  ||| |||||| ||||  
guag        uugag    cg gac ucuu uuacuag uaacccaa   c aucucaa  ua ccca gacu  ucu uuuccu cagc u
    -aguuauu     --au  a   a    u       c        cuu a       cc  u    c    cc   a      -    g
Get sequence
Deep sequencing
9 reads, 3 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr4: 6546647-6546827 [-]
intergenic

Mature sequence ath-miR5028

Accession MIMAT0020534
Sequence

39 -  

aauuggguuuaugcuagaguu

 - 59

Get sequence
Deep sequencing 5 reads, 3 experiments
Evidence experimental; Solexa [1]

References

1
PMID:21357774 "MicroRNA activity in the Arabidopsis male germline" Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD J Exp Bot. 62:1611-1620(2011).