Stem-loop sequence ath-MIR5027

Accession MI0017897
Description Arabidopsis thaliana miR5027 stem-loop
Stem-loop 
--------     u  ga        aaaac     g       c              g         ----a          gaca 
        ucaau ua  uaugugag     cgguu gaacuug cuuaaccaagaaaa cuacaaaau     uuuuuuuucu    a
        ||||| ||  ||||||||     ||||| ||||||| |||||||||||||| |||||||||     ||||||||||     
        gguug gu  guacauuu     gccaa cuuggac gaauugguucuuuu gguguuuua     aagaaaaaga    a
agugugua     u  ac        ----a     a       c              -         gcuaa          aaaa
Get sequence
Deep sequencing
3 reads, 2 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr5: 10943902-10944062 [+]
intergenic

Mature sequence ath-miR5027

Accession MIMAT0020533
Sequence

22 -  

accgguuggaacuugccuuaa

 - 42

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence experimental; Solexa [1]

References

1
PMID:21357774 "MicroRNA activity in the Arabidopsis male germline" Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD J Exp Bot. 62:1611-1620(2011).