Stem-loop sequence hsa-mir-5009

Accession MI0017877
Description Homo sapiens miR-5009 stem-loop
Stem-loop 
gaccagaagu    ug a          uu           g   uuugc 
          guuu  g uuuuggacuu  ucagauuuggg aua     a
          ||||  | ||||||||||  ||||||||||| |||     u
          uaaa  c aaaaccugaa  agucuaaaucc uau     u
gaauaaccag    gu c          --           -   ucaua
Get sequence
Deep sequencing
11 reads, 5 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr15: 90427163-90427262 [-]
sense
OTTHUMT00000417054 ; AP3S2-004; intron 1
OTTHUMT00000417054 ; AP3S2-004; intron 1
OTTHUMT00000313422 ; AP3S2-001; intron 3
OTTHUMT00000313422 ; AP3S2-001; intron 3
OTTHUMT00000417306 ; AP3S2-013; intron 3
OTTHUMT00000417051 ; AP3S2-009; intron 3
OTTHUMT00000417052 ; AP3S2-005; intron 3
OTTHUMT00000417053 ; AP3S2-006; intron 3
OTTHUMT00000417055 ; AP3S2-008; intron 3
OTTHUMT00000417058 ; AP3S2-002; intron 3
OTTHUMT00000417059 ; AP3S2-010; intron 3
OTTHUMT00000417061 ; RP11-233C13.1-005; intron 3
OTTHUMT00000417307 ; RP11-233C13.1-007; intron 3
OTTHUMT00000416956 ; RP11-233C13.1-002; intron 3
OTTHUMT00000313422 ; AP3S2-001; intron 3
OTTHUMT00000417306 ; AP3S2-013; intron 3
OTTHUMT00000417051 ; AP3S2-009; intron 3
OTTHUMT00000417052 ; AP3S2-005; intron 3
OTTHUMT00000417053 ; AP3S2-006; intron 3
OTTHUMT00000417055 ; AP3S2-008; intron 3
OTTHUMT00000417058 ; AP3S2-002; intron 3
OTTHUMT00000417059 ; AP3S2-010; intron 3
OTTHUMT00000417061 ; RP11-233C13.1-005; intron 3
OTTHUMT00000417307 ; RP11-233C13.1-007; intron 3
OTTHUMT00000416956 ; RP11-233C13.1-002; intron 3
OTTHUMT00000417308 ; RP11-233C13.1-006; intron 4
OTTHUMT00000417308 ; RP11-233C13.1-006; intron 4
OTTHUMT00000367641 ; RP11-233C13.1-001; intron 7
OTTHUMT00000367641 ; RP11-233C13.1-001; intron 7
OTTHUMT00000367641 ; RP11-233C13.1-001; intron 7
ENST00000559162 ; AP3S2-004; intron 1
ENST00000559162 ; AP3S2-004; intron 1
ENST00000336418 ; AP3S2-001; intron 3
ENST00000423566 ; AP3S2-201; intron 3
ENST00000336418 ; AP3S2-001; intron 3
ENST00000423566 ; AP3S2-013; intron 3
ENST00000558011 ; AP3S2-009; intron 3
ENST00000557999 ; AP3S2-005; intron 3
ENST00000558806 ; AP3S2-006; intron 3
ENST00000558999 ; AP3S2-008; intron 3
ENST00000560184 ; AP3S2-002; intron 3
ENST00000560251 ; AP3S2-010; intron 3
ENST00000560940 ; C15orf38-AP3S2-005; intron 3
ENST00000558648 ; C15orf38-AP3S2-007; intron 3
ENST00000560224 ; C15orf38-AP3S2-002; intron 3
ENST00000336418 ; AP3S2-001; intron 3
ENST00000423566 ; AP3S2-013; intron 3
ENST00000558011 ; AP3S2-009; intron 3
ENST00000557999 ; AP3S2-005; intron 3
ENST00000558806 ; AP3S2-006; intron 3
ENST00000558999 ; AP3S2-008; intron 3
ENST00000560184 ; AP3S2-002; intron 3
ENST00000560251 ; AP3S2-010; intron 3
ENST00000560940 ; C15orf38-AP3S2-005; intron 3
ENST00000558648 ; C15orf38-AP3S2-007; intron 3
ENST00000560224 ; C15orf38-AP3S2-002; intron 3
ENST00000559629 ; C15orf38-AP3S2-006; intron 4
ENST00000559629 ; C15orf38-AP3S2-006; intron 4
ENST00000398333 ; C15orf38-AP3S2-001; intron 7
ENST00000398333 ; C15orf38-AP3S2-001; intron 7
ENST00000398333 ; C15orf38-AP3S2-001; intron 7

Mature sequence hsa-miR-5009-5p

Accession MIMAT0021041
Sequence

21 -  

uuggacuuuuucagauuuggggau

 - 44

Get sequence
Deep sequencing 8 reads, 3 experiments
Evidence not experimental
Predicted targets

Mature sequence hsa-miR-5009-3p

Accession MIMAT0021042
Sequence

61 -  

uccuaaaucugaaaguccaaaa

 - 82

Get sequence
Evidence not experimental
Predicted targets

References

1
PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).