Stem-loop sequence hsa-mir-5006

Accession MI0017873
Description Homo sapiens miR-5006 stem-loop
Stem-loop 
aaccau     --gg   u            ca     u         --cc    u 
      uaggg    cug gguuugccaggg  ggagg ggaagggag    ccau u
      |||||    ||| ||||||||||||  ||||| |||||||||    |||| a
      auuuc    gac ucggacgguccu  cuuuc ccuuuccuu    ggug c
--gacc     aaga   u            ac     -         caau    a
Get sequence
Deep sequencing
6 reads, 5 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr13: 42142422-42142531 [-]
sense
OTTHUMT00000354828 ; KIAA0564-005; exon 45
OTTHUMT00000354828 ; KIAA0564-005; exon 45
OTTHUMT00000044688 ; KIAA0564-001; exon 46
OTTHUMT00000044688 ; KIAA0564-001; exon 46
ENST00000379310 ; KIAA0564-005; exon 45
ENST00000379310 ; KIAA0564-005; exon 45
ENST00000251030 ; KIAA0564-001; exon 46
ENST00000251030 ; KIAA0564-001; exon 46

Mature sequence hsa-miR-5006-5p

Accession MIMAT0021033
Sequence

21 -  

uugccagggcaggagguggaa

 - 41

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [2]
Predicted targets

Mature sequence hsa-miR-5006-3p

Accession MIMAT0021034
Sequence

70 -  

uuucccuuuccauccuggcag

 - 90

Get sequence
Deep sequencing 4 reads, 3 experiments
Evidence experimental; Solexa [2]
Predicted targets

References

1
PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).
2
PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).