Stem-loop sequence hsa-mir-5004

Accession MI0017870
Description Homo sapiens miR-5004 stem-loop
Stem-loop 
-ggcacuugcuu       ag     -a     c       c a a ug g  gu 
            ggggguu  ugagg  caggg aaauuca g g u  g uu  g
            |||||||  |||||  ||||| ||||||| | | |  | ||   
            ccuucag  acucc  guccu uuuaggu c c a  c ga  c
gguacagacuuu       -g     gg     -       u a - gu g  ga
Get sequence
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr6: 33406108-33406214 [+]
sense
OTTHUMT00000342678 ; SYNGAP1-010; intron 1
OTTHUMT00000342678 ; SYNGAP1-010; 3'UTR (exon 2)
OTTHUMT00000342678 ; SYNGAP1-010; 3'UTR (exon 2)
OTTHUMT00000258901 ; SYNGAP1-003; intron 6
OTTHUMT00000258901 ; SYNGAP1-003; 3'UTR (exon 7)
OTTHUMT00000258901 ; SYNGAP1-003; 3'UTR (exon 7)
OTTHUMT00000258900 ; SYNGAP1-002; intron 8
OTTHUMT00000076151 ; SYNGAP1-001; intron 8
OTTHUMT00000342677 ; SYNGAP1-009; intron 8
OTTHUMT00000258902 ; SYNGAP1-004; intron 8
OTTHUMT00000258900 ; SYNGAP1-002; exon 9
OTTHUMT00000076151 ; SYNGAP1-001; 3'UTR (exon 9)
OTTHUMT00000342677 ; SYNGAP1-009; 3'UTR (exon 9)
OTTHUMT00000258902 ; SYNGAP1-004; exon 9
OTTHUMT00000258900 ; SYNGAP1-002; exon 9
OTTHUMT00000076151 ; SYNGAP1-001; 3'UTR (exon 9)
OTTHUMT00000342677 ; SYNGAP1-009; 3'UTR (exon 9)
OTTHUMT00000258902 ; SYNGAP1-004; exon 9
ENST00000440474 ; SYNGAP1-010; intron 1
ENST00000440474 ; SYNGAP1-010; 3'UTR (exon 2)
ENST00000440474 ; SYNGAP1-010; 3'UTR (exon 2)
ENST00000428982 ; SYNGAP1-003; intron 6
ENST00000428982 ; SYNGAP1-003; 3'UTR (exon 7)
ENST00000428982 ; SYNGAP1-003; 3'UTR (exon 7)
ENST00000479510 ; SYNGAP1-002; intron 8
ENST00000418600 ; SYNGAP1-001; intron 8
ENST00000449372 ; SYNGAP1-009; intron 8
ENST00000496374 ; SYNGAP1-004; intron 8
ENST00000293748 ; SYNGAP1-201; intron 8
ENST00000479510 ; SYNGAP1-002; exon 9
ENST00000418600 ; SYNGAP1-001; 3'UTR (exon 9)
ENST00000449372 ; SYNGAP1-009; 3'UTR (exon 9)
ENST00000496374 ; SYNGAP1-004; exon 9
ENST00000293748 ; SYNGAP1-201; 3'UTR (exon 9)
ENST00000479510 ; SYNGAP1-002; exon 9
ENST00000418600 ; SYNGAP1-001; 3'UTR (exon 9)
ENST00000449372 ; SYNGAP1-009; 3'UTR (exon 9)
ENST00000496374 ; SYNGAP1-004; exon 9
ENST00000293748 ; SYNGAP1-201; 3'UTR (exon 9)

Mature sequence hsa-miR-5004-5p

Accession MIMAT0021027
Sequence

21 -  

ugaggacagggcaaauucacga

 - 42

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence not experimental
Predicted targets

Mature sequence hsa-miR-5004-3p

Accession MIMAT0021028
Sequence

67 -  

cuuggauuuuccugggccucag

 - 88

Get sequence
Evidence not experimental
Predicted targets

References

1
PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).