Stem-loop sequence hsa-mir-5003

Accession

MI0017869

Description

Homo sapiens miR-5003 stem-loop

Stem-loop

auga    g      g   u    a         u c       a  ug 
    guuu cuuugu uca ccuc caacaaccu g aggguag ga  a
    |||| |||||| ||| |||| ||||||||| | ||||||| ||  u
    caag gggacg ggu gggg guuguugga c uuucauc cu  u
gaga    g      g   c    -         u u       -  uu 

Deep sequencing

9 reads, 7 experiments

Genome context

• Coordinates (GRCh37.p5): chr5: 172089168-172089266 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000372478 ; NEURL1B-002; intron 1

  OTTHUMT00000372479 ; NEURL1B-003; intron 1

  OTTHUMT00000372453 ; NEURL1B-001; intron 1

  OTTHUMT00000372478 ; NEURL1B-002; intron 1

  OTTHUMT00000372479 ; NEURL1B-003; intron 1

  OTTHUMT00000372453 ; NEURL1B-001; intron 1

  OTTHUMT00000372478 ; NEURL1B-002; intron 1

  OTTHUMT00000372479 ; NEURL1B-003; intron 1

  OTTHUMT00000372453 ; NEURL1B-001; intron 1

  ENST00000520919 ; NEURL1B-002; intron 1

  ENST00000522853 ; NEURL1B-003; intron 1

  ENST00000369800 ; NEURL1B-001; intron 1

  ENST00000520919 ; NEURL1B-002; intron 1

  ENST00000522853 ; NEURL1B-003; intron 1

  ENST00000369800 ; NEURL1B-001; intron 1

  ENST00000520919 ; NEURL1B-002; intron 1

  ENST00000522853 ; NEURL1B-003; intron 1

  ENST00000369800 ; NEURL1B-001; intron 1

Mature sequence hsa-miR-5003-5p

• Accession: MIMAT0021025
• Sequence: 23 - ucacaacaaccuugcaggguaga - 45
• Deep sequencing: 1 reads, 1 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5003-5p
  • MIRDB:hsa-miR-5003-5p
  • TARGETMINER:hsa-miR-5003-5p

Mature sequence hsa-miR-5003-3p

• Accession: MIMAT0021026
• Sequence: 58 - uacuuuucuagguuguugggg - 78
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5003-3p
  • MIRDB:hsa-miR-5003-3p
  • TARGETMINER:hsa-miR-5003-3p

References

1. PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).