Stem-loop sequence hsa-mir-5001

Accession MI0017867
Description Homo sapiens miR-5001 stem-loop
Stem-loop 
--agcuca      cug    g     -     uc  c         --   u 
        gggcgg   cgca agggc uggac  ag ggcggagcu  ggc g
        ||||||   |||| ||||| |||||  || |||||||||  ||| c
        cccgcc   gugu uccug accug  uc ccgucuuga  ccg u
uccucucg      -ca    -     g     --  u         cu   g
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Deep sequencing
reads, experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr2: 233415184-233415283 [-]
sense
OTTHUMT00000257037 ; TIGD1-001; 5'UTR (exon 1)
OTTHUMT00000257037 ; TIGD1-001; 5'UTR (exon 1)
OTTHUMT00000257037 ; TIGD1-001; 5'UTR (exon 1)
ENST00000408957 ; TIGD1-001; 5'UTR (exon 1)
ENST00000408957 ; TIGD1-001; 5'UTR (exon 1)
antisense
OTTHUMT00000257033 ; EIF4E2-001; 3'UTR (exon 1)
OTTHUMT00000257033 ; EIF4E2-001; 3'UTR (exon 1)
OTTHUMT00000257033 ; EIF4E2-001; 3'UTR (exon 1)
ENST00000258416 ; EIF4E2-001; 3'UTR (exon 1)
ENST00000258416 ; EIF4E2-001; 3'UTR (exon 1)
ENST00000258416 ; EIF4E2-001; 3'UTR (exon 1)

Mature sequence hsa-miR-5001-5p

Accession MIMAT0021021
Sequence

21 -  

agggcuggacucagcggcggagcu

 - 44

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Evidence not experimental
Predicted targets

Mature sequence hsa-miR-5001-3p

Accession MIMAT0021022
Sequence

60 -  

uucugccucuguccagguccuu

 - 81

Get sequence
Evidence not experimental
Predicted targets

References

1
PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).
2
PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).