Stem-loop sequence hsa-mir-5000

Accession

MI0017866

Description

Homo sapiens miR-5000 stem-loop

Stem-loop

cugaa     --   ---          c             u       aacuug 
     gagua  gag   uguguggucc aguucagaagugu ccugagu      u
     |||||  |||   |||||||||| ||||||||||||| |||||||       
     uucgu  cuc   acauaccagg ucaagucuucaca ggacuca      g
-----     cc   ugg          u             -       auauuc 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr2: 75317939-75318041 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000252239 ; TACR1-001; intron 2

  OTTHUMT00000328659 ; TACR1-002; intron 2

  OTTHUMT00000252239 ; TACR1-001; intron 2

  OTTHUMT00000328659 ; TACR1-002; intron 2

  OTTHUMT00000252239 ; TACR1-001; intron 2

  OTTHUMT00000328659 ; TACR1-002; intron 2

  ENST00000305249 ; TACR1-001; intron 2

  ENST00000409848 ; TACR1-002; intron 2

  ENST00000305249 ; TACR1-001; intron 2

  ENST00000409848 ; TACR1-002; intron 2

  ENST00000305249 ; TACR1-001; intron 2

  ENST00000409848 ; TACR1-002; intron 2

Mature sequence hsa-miR-5000-5p

• Accession: MIMAT0021019
• Sequence: 24 - caguucagaaguguuccugagu - 45
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5000-5p
  • MIRDB:hsa-miR-5000-5p
  • TARGETMINER:hsa-miR-5000-5p

Mature sequence hsa-miR-5000-3p

• Accession: MIMAT0021020
• Sequence: 62 - ucaggacacuucugaacuugga - 83
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5000-3p
  • MIRDB:hsa-miR-5000-3p
  • TARGETMINER:hsa-miR-5000-3p

References

1. PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).
2. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).