Stem-loop sequence dme-mir-4981

Accession

MI0017767

Description

Drosophila melanogaster miR-4981 stem-loop

Stem-loop

ugg     ---u    g        -c          g   --   u  a 
   ccacg    gccc caagacgc  uucggccggc caa  agu uc a
   |||||    |||| ||||||||  |||||||||| |||  ||| || u
   ggugc    uggg guucugcg  gagcuggccg guu  uua ag u
uua     uugu    -        ac          -   cc   u  u 

Deep sequencing

11 reads, 4 experiments

Genome context

• Coordinates (BDGP5.0): 2R: 3902754-3902848 [+]
• Overlapping transcripts:

  intergenic

Mature sequence dme-miR-4981-3p

• Accession: MIMAT0020214
• Sequence: 57 - uuggccggucgagcagcgucu - 77
• Deep sequencing: 9 reads, 4 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • RNA22-DME:dme-miR-4981-3p

References

1. PMID:21177969 "Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC Genome Res. 21:203-215(2011).