Stem-loop sequence dme-mir-4958

Accession MI0017744
Description Drosophila melanogaster miR-4958 stem-loop
Stem-loop 
-ucuc    a cu   guu          -             a   gc     uu ua -au  g     
     uggc g  gca   ccguuuccgg agcgggaucugga cgg  ucugg  c  g   ca gauc 
     |||| |  |||   |||||||||| ||||||||||||| |||  |||||  |  |   || ||| c
     accg c  cgu   ggcaaaggcc uugcccuggaccu gcc  ggacc  g  c   gu cuaa 
acgua    c ac   ---          c             c   au     -u gc cac  a
Get sequence
Deep sequencing
32 reads, 13 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
X: 15974956-15975089 [-]
sense
FBtr0074256 ; Tob-RB; exon 3
FBtr0074256 ; Tob-RB; exon 3
FBtr0074256 ; Tob-RB; exon 3
FBtr0301653 ; Tob-RD; exon 4
FBtr0074255 ; Tob-RA; exon 4
FBtr0301653 ; Tob-RD; exon 4
FBtr0074255 ; Tob-RA; exon 4
FBtr0301653 ; Tob-RD; exon 4
FBtr0074255 ; Tob-RA; exon 4
FBtr0301652 ; Tob-RC; exon 5
FBtr0301652 ; Tob-RC; exon 5

Mature sequence dme-miR-4958-5p

Accession MIMAT0020177
Sequence

32 -  

gggaucuggaacgggcucuggu

 - 53

Get sequence
Deep sequencing 2 reads, 2 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence dme-miR-4958-3p

Accession MIMAT0020178
Sequence

85 -  

cagguaccgcuccaggucccgu

 - 106

Get sequence
Deep sequencing 16 reads, 7 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21177969 "Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC Genome Res. 21:203-215(2011).