Stem-loop sequence dme-mir-4941

Accession MI0017727
Description Drosophila melanogaster miR-4941 stem-loop
Stem-loop 
augacc    a - agaug        c    u  --          --  gc 
      ggcg g g     cgauuccu gagc gc  ucaccgccuu  ug  u
      |||| | |     |||||||| |||| ||  ||||||||||  ||  u
      ucgc c c     gcugaggg cucg cg  gguggcggag  ac  g
-acaac    a a guaua        u    c  cc          cu  ag
Get sequence
Deep sequencing
19 reads, 8 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3L: 16024289-16024391 [+]
sense
FBtr0075436 ; Notum-RB; 3'UTR (exon 3)
FBtr0075436 ; Notum-RB; 3'UTR (exon 3)
FBtr0075436 ; Notum-RB; 3'UTR (exon 3)
FBtr0075435 ; Notum-RA; 3'UTR (exon 4)
FBtr0075435 ; Notum-RA; 3'UTR (exon 4)
FBtr0075435 ; Notum-RA; 3'UTR (exon 4)

Mature sequence dme-miR-4941-5p

Accession MIMAT0020148
Sequence

24 -  

ccucgagcugcucaccgccuu

 - 44

Get sequence
Deep sequencing 17 reads, 7 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence dme-miR-4941-3p

Accession MIMAT0020149
Sequence

60 -  

ggcgguggccgccgcucugggagu

 - 83

Get sequence
Deep sequencing 2 reads, 2 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21177969 "Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC Genome Res. 21:203-215(2011).