Stem-loop sequence dme-mir-4940

Accession MI0017726
Description Drosophila melanogaster miR-4940 stem-loop
Stem-loop 
-uua   -caacuuauc           g  u       a   guuaucccuu 
    ucg          gaucggguggc ga auagauc uug          a
    |||          ||||||||||| || ||||||| |||           
    agc          uuagcccgccg cu uguuuag aac          a
gcac   aacauacauu           g  u       -   aaacgaaauu
Get sequence
Deep sequencing
18 reads, 6 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3L: 9137693-9137797 [+]
sense
FBtr0076533 ; CG4641-RA; exon 2
FBtr0076533 ; CG4641-RA; exon 2
FBtr0076533 ; CG4641-RA; exon 2

Mature sequence dme-miR-4940-5p

Accession MIMAT0020146
Sequence

23 -  

uggcggauauagaucauugguu

 - 44

Get sequence
Deep sequencing 9 reads, 4 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence dme-miR-4940-3p

Accession MIMAT0020147
Sequence

62 -  

aacaagauuuguuucggccgcc

 - 83

Get sequence
Deep sequencing 7 reads, 3 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21177969 "Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC Genome Res. 21:203-215(2011).