Stem-loop sequence cel-mir-4929

Accession

MI0017715 (change log)

Description

Caenorhabditis elegans miR-4929 stem-loop

Stem-loop

   uaaaauauuuu    c      -u       c         aaaa    ----c    ca 
5'            aauu auuaaa  aaauuug gcguaagau    ugca     ugca  c
              |||| ||||||  ||||||| |||||||||    ||||     ||||   
3'            uuaa uaauuu  uuuaaac cgcauucua    acgu     acgu  a
   -------acuu    u      cu       u         cacc    aacac    aa 

Deep sequencing

69 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 13461755-13461864 [-]
• Overlapping transcripts:

  sense

  E01G4.3a ; E01G4.3a; intron 1

  E01G4.3b.1 ; E01G4.3b.1; 5'UTR (exon 1)

  E01G4.3b.2 ; E01G4.3b.2; intron 1

  E01G4.3b.3 ; E01G4.3b.3; intron 1

  E01G4.3c ; E01G4.3c; intron 3

Database links

• RNAcentral:URS0000009BF7_6239
• miRBase Tracker:MI0017715

Mature sequence cel-miR-4929

• Accession: MIMAT0020135
• Sequence: 67 - aaugcaccacaucuuacgcuca - 88
• Deep sequencing: 61 reads, 11 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00002676DE_6239

References

1. PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).