Stem-loop sequence cel-mir-4923b

Accession MI0017711
Description Caenorhabditis elegans miR-4923b stem-loop
Stem-loop 
--           c     au    ug  a 
  guaagcaaauu ccguc  uuuc  ga a
  ||||||||||| |||||  ||||  ||  
  cauuuguuuaa ggcgg  aaag  uu u
ga           c     -c    uu  a
Get sequence
Deep sequencing
1 reads, 1 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 1879634-1879692 [+]
sense
Y59E1B.1 ; Y59E1B.1; intron 3
Y59E1B.1 ; Y59E1B.1; intron 3
Y59E1B.1 ; Y59E1B.1; intron 3
Clustered miRNAs
< 10kb from cel-mir-4923b
cel-mir-4807 X: 1872460-1872520 [+]
cel-mir-4808 X: 1872946-1873002 [+]
cel-mir-4809 X: 1873640-1873698 [+]
cel-mir-2220 X: 1873821-1873878 [+]
cel-mir-4810 X: 1875732-1875788 [+]
cel-mir-1018 X: 1879452-1879507 [+]
cel-mir-4925 X: 1879556-1879614 [+]
cel-mir-4923b X: 1879634-1879692 [+]
cel-mir-4923a X: 1879870-1879930 [+]
cel-mir-4921 X: 1879973-1880032 [+]

Mature sequence cel-miR-4923b

Accession MIMAT0020131
Sequence

38 -  

aacggcggcaauuuguuuacag

 - 59

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21177960 "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans" Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC Genome Res. 21:286-300(2011).