Stem-loop sequence cel-mir-4921

Accession MI0017706
Description Caenorhabditis elegans miR-4921 stem-loop
Stem-loop 
--     uu a     uca      a  uu 
  guaag  g ugagu   cacaua au  u
  |||||  | |||||   |||||| ||  g
  cguuc  u acuca   guguau ua  g
ga     uu c     -cc      a  ua
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Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 1879973-1880032 [+]
sense
Y59E1B.1 ; Y59E1B.1; intron 6
Y59E1B.1 ; Y59E1B.1; intron 6
Y59E1B.1 ; Y59E1B.1; intron 6
Clustered miRNAs
< 10kb from cel-mir-4921
cel-mir-4807 X: 1872460-1872520 [+]
cel-mir-4808 X: 1872946-1873002 [+]
cel-mir-4809 X: 1873640-1873698 [+]
cel-mir-2220 X: 1873821-1873878 [+]
cel-mir-4810 X: 1875732-1875788 [+]
cel-mir-1018 X: 1879452-1879507 [+]
cel-mir-4925 X: 1879556-1879614 [+]
cel-mir-4923b X: 1879634-1879692 [+]
cel-mir-4923a X: 1879870-1879930 [+]
cel-mir-4921 X: 1879973-1880032 [+]

Mature sequence cel-miR-4921

Accession MIMAT0020127
Sequence

39 -  

ugugccacucacuuucuugcag

 - 60

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Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21177960 "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans" Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC Genome Res. 21:286-300(2011).