Stem-loop sequence bfl-mir-4884

Accession MI0017653
Description Branchiostoma floridae miR-4884 stem-loop
Stem-loop 
--    u g  g              uca    gucug 
  caug g ag aggaaagacacagg   ugau     u
  |||| | || ||||||||||||||   ||||     g
  guac c uc uccuuucugugucu   acug     u
gg    - g  g              -cg    ucuuc
Get sequence
Deep sequencing
8 reads, 1 experiments
Genome context
Coordinates (JGI2.0) Overlapping transcripts
Bf_V2_215: 1697024-1697098 [+]
intergenic
Clustered miRNAs
< 10kb from bfl-mir-4884
bfl-mir-4884 Bf_V2_215: 1697024-1697098 [+]
bfl-mir-4882b Bf_V2_215: 1699499-1699583 [+]
bfl-mir-4882c Bf_V2_215: 1699784-1699878 [+]
bfl-mir-4882a Bf_V2_215: 1699928-1700001 [+]

Mature sequence bfl-miR-4884

Accession MIMAT0020470
Sequence

48 -  

agcucugugucuuuccugcugc

 - 69

Get sequence
Deep sequencing 8 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).