Stem-loop sequence cel-mir-4812

Accession MI0017542
Description Caenorhabditis elegans miR-4812 stem-loop
Gene family MIPF0000460; mir-1829
Stem-loop 
----agaa   --    cgc        a       aaaa 
        gua  agag   uuguagug guuguca    u
        |||  ||||   |||||||| |||||||    u
        cau  ucuc   aacgucac caacagu    g
gguuuuua   ua    uuu        -       auga
Get sequence
Deep sequencing
17 reads, 5 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 15242705-15242780 [-]
sense
F39B1.1 ; F39B1.1; intron 7
F39B1.1 ; F39B1.1; intron 7
F39B1.1 ; F39B1.1; intron 7
Clustered miRNAs
< 10kb from cel-mir-4812
cel-mir-4812 X: 15242705-15242780 [-]
cel-mir-1829c X: 15236293-15236354 [-]

Mature sequence cel-miR-4812-5p

Accession MIMAT0019998
Previous IDs cel-miR-4812
Sequence

7 -  

aagagcgcuuguagugaguugu

 - 28

Get sequence
Deep sequencing 10 reads, 1 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence cel-miR-4812-3p

Accession MIMAT0019999
Previous IDs cel-miR-4812*
Sequence

45 -  

caaccacugcaauuucucuau

 - 65

Get sequence
Deep sequencing 7 reads, 4 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21085120 "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs" Jan CH, Friedman RC, Ruby JG, Bartel DP Nature. 469:97-101(2011).