Stem-loop sequence cel-mir-4809

Accession MI0017539
Description Caenorhabditis elegans miR-4809 stem-loop
Stem-loop 
-- u         -    a      uugau 
  g aaguucaga guug auuauc     c
  | ||||||||| |||| ||||||      
  c uucgggucu caac uaauag     a
ga c         u    a      uuuau
Get sequence
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 1873640-1873698 [+]
sense
Y59E1B.2 ; Y59E1B.2; intron 2
Y59E1B.2 ; Y59E1B.2; intron 2
Y59E1B.2 ; Y59E1B.2; intron 2
Clustered miRNAs
< 10kb from cel-mir-4809
cel-mir-4807 X: 1872460-1872520 [+]
cel-mir-4808 X: 1872946-1873002 [+]
cel-mir-4809 X: 1873640-1873698 [+]
cel-mir-2220 X: 1873821-1873878 [+]
cel-mir-4810 X: 1875732-1875788 [+]
cel-mir-1018 X: 1879452-1879507 [+]
cel-mir-4925 X: 1879556-1879614 [+]
cel-mir-4923b X: 1879634-1879692 [+]
cel-mir-4923a X: 1879870-1879930 [+]
cel-mir-4921 X: 1879973-1880032 [+]

Mature sequence cel-miR-4809-5p

Accession MIMAT0019993
Previous IDs cel-miR-4809*
Sequence

1 -  

guaaguucagaguugaauuauc

 - 22

Get sequence
Evidence experimental; Solexa [1-2]
Predicted targets

Mature sequence cel-miR-4809-3p

Accession MIMAT0019994
Previous IDs cel-miR-4809
Sequence

37 -  

uaauacaacuucugggcuuccag

 - 59

Get sequence
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:21085120 "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs" Jan CH, Friedman RC, Ruby JG, Bartel DP Nature. 469:97-101(2011).
2
PMID:21177960 "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans" Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC Genome Res. 21:286-300(2011).