Stem-loop sequence cel-mir-4808

AccessionMI0017538 (change log)
DescriptionCaenorhabditis elegans miR-4808 stem-loop
Stem-loop
   --      u   u   u      aauua 
5'   guaaga aga uag gcuuuc     u
     |||||| ||| ||| ||||||     u
3'   cauucu ucu auc cgaaag     u
   ga      c   u   u      caaac 
Get sequence
Deep sequencing
52 reads, 0 reads per million, 13 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (WBcel235; GCA_000002985.3) Overlapping transcripts
chrX: 1872952-1873008 [+]
intergenic
Clustered miRNAs
< 10kb from cel-mir-4808
cel-mir-4807chrX: 1872466-1872526 [+]
cel-mir-4808chrX: 1872952-1873008 [+]
cel-mir-4809chrX: 1873646-1873704 [+]
cel-mir-2220chrX: 1873827-1873884 [+]
cel-mir-4810bchrX: 1874016-1874075 [+]
cel-mir-4810achrX: 1875738-1875794 [+]
cel-mir-1018chrX: 1879458-1879513 [+]
cel-mir-4925chrX: 1879562-1879620 [+]
cel-mir-4923bchrX: 1879640-1879698 [+]
cel-mir-4923achrX: 1879876-1879936 [+]
cel-mir-4921chrX: 1879979-1880038 [+]
Database links

Mature sequence cel-miR-4808-5p

Accession MIMAT0019991
Previous IDscel-miR-4808*
Sequence

1 - 

guaagauagauuagugcuuuc

 - 21

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence experimental; Illumina [1]

Mature sequence cel-miR-4808-3p

Accession MIMAT0019992
Previous IDscel-miR-4808
Sequence

37 - 

aagcucuauucucucuuacag

 - 57

Get sequence
Deep sequencing49 reads, 13 experiments
Evidence experimental; Illumina [1]
Database links

References

1
PMID:21085120 "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs" Jan CH, Friedman RC, Ruby JG, Bartel DP Nature. 469:97-101(2011).