Stem-loop sequence cel-mir-4805

Accession

MI0017535 (change log)

Description

Caenorhabditis elegans miR-4805 stem-loop

Stem-loop

   -ag  g  gg             c      g c          uuu u 
5'    uc ga  caggggugugcgg aaauuu c gaauuugccg   g c
      || ||  ||||||||||||| |||||| | ||||||||||   | g
3'    ag cu  guccccacacgcc uuuaga g uuuaaacggc   c a
   ccg  g  -a             u      - u          --u g 

Deep sequencing

204 reads, 0 reads per million, 15 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 1061648-1061741 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00003B805D_6239
• miRBase Tracker:MI0017535

Mature sequence cel-miR-4805-5p

• Accession: MIMAT0019986
• Previous IDs: cel-miR-4805*
• Sequence: 18 - ugcggcaaauuugccgaauuugc - 40
• Deep sequencing: 31 reads, 12 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001A41AA_6239

Mature sequence cel-miR-4805-3p

• Accession: MIMAT0019987
• Previous IDs: cel-miR-4805
• Sequence: 58 - aaauuuugagauuuuccgcaca - 79
• Deep sequencing: 107 reads, 14 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002A30E7_6239

References

1. PMID:21085120 "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs" Jan CH, Friedman RC, Ruby JG, Bartel DP Nature. 469:97-101(2011).