Stem-loop sequence hsa-mir-3688-2

Accession

MI0017447

Description

Homo sapiens miR-3688-2 stem-loop

Gene family

MIPF0001263; mir-3688

Stem-loop

       a                            aacaga 
ucacuuu aagaguggcaaagucuuuccauaugugu      c
||||||| ||||||||||||||||||||||||||||      a
agugaaa uucucaccguuucagaaagguauacaua      u
       g                            cauaca 

Deep sequencing

11 reads, 6 experiments

Genome context

• Coordinates (GRCh37.p5): chr4: 160049957-160050043 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000365004 ; RAPGEF2-003; intron 1

  OTTHUMT00000365004 ; RAPGEF2-003; intron 1

  OTTHUMT00000365004 ; RAPGEF2-003; intron 1

  ENST00000505478 ; RAPGEF2-003; intron 1

  ENST00000505478 ; RAPGEF2-003; intron 1

  ENST00000505478 ; RAPGEF2-003; intron 1

  antisense

  ENST00000583455 ; MIR3688-1-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-3688-2

• hsa-mir-3688-1: chr4: 160049954-160050046 [-]
• hsa-mir-3688-2: chr4: 160049957-160050043 [+]

Database links

• ENTREZGENE: 100616303;MIR3688-2

Mature sequence hsa-miR-3688-5p

• Accession: MIMAT0019223
• Sequence: 12 - aguggcaaagucuuuccauau - 32
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3688-5p
  • MIRDB:hsa-miR-3688-5p
  • TARGETMINER:hsa-miR-3688-5p

Mature sequence hsa-miR-3688-3p

• Accession: MIMAT0018116
• Previous IDs: hsa-miR-3688
• Sequence: 57 - uauggaaagacuuugccacucu - 78
• Deep sequencing: 22 reads, 6 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3688-3p
  • MIRDB:hsa-miR-3688-3p
  • RNA22-HSA:hsa-miR-3688-3p
  • TARGETMINER:hsa-miR-3688-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).