Stem-loop sequence hsa-mir-4799

Accession

MI0017446

Description

Homo sapiens miR-4799 stem-loop

Stem-loop

           c                     gag 
acugcuaauau uaaaugcagcaugccaguccu   a
||||||||||| |||||||||||||||||||||    
ugacgauuaua auuuacgucguacggucaggg   u
           u                     acg 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr4: 148703746-148703819 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000365006 ; ARHGAP10-002; intron 1

  OTTHUMT00000365005 ; ARHGAP10-001; intron 1

  OTTHUMT00000365006 ; ARHGAP10-002; intron 1

  OTTHUMT00000365005 ; ARHGAP10-001; intron 1

  OTTHUMT00000365006 ; ARHGAP10-002; intron 1

  OTTHUMT00000365005 ; ARHGAP10-001; intron 1

  ENST00000510379 ; ARHGAP10-002; intron 1

  ENST00000336498 ; ARHGAP10-001; intron 1

  ENST00000336498 ; ARHGAP10-001; intron 1

  ENST00000510379 ; ARHGAP10-002; intron 1

  ENST00000510379 ; ARHGAP10-002; intron 1

  ENST00000336498 ; ARHGAP10-001; intron 1

Database links

• ENTREZGENE: 100616246;MIR4799

Mature sequence hsa-miR-4799-5p

• Accession: MIMAT0019976
• Sequence: 10 - aucuaaaugcagcaugccaguc - 31
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4799-5p
  • MIRDB:hsa-miR-4799-5p
  • TARGETMINER:hsa-miR-4799-5p

Mature sequence hsa-miR-4799-3p

• Accession: MIMAT0019977
• Sequence: 45 - acuggcaugcugcauuuauaua - 66
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4799-3p
  • MIRDB:hsa-miR-4799-3p
  • TARGETMINER:hsa-miR-4799-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).