Stem-loop sequence hsa-mir-371b

Accession

MI0017393

Description

Homo sapiens miR-371b stem-loop

Gene family

MIPF0000068; mir-290

Stem-loop

gguaa        aga   c         acca 
     cacucaaa   ugg ggcacuuuc    g
     ||||||||   ||| |||||||||    a
     gugaguuu   acc ccgugaaag    g
---cc        gac   c         acga 

Deep sequencing

3 reads, 2 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 54290931-54290996 [-]
• Overlapping transcripts:

  antisense

  ENST00000362161 ; MIR371-201; exon 1

  ENST00000362161 ; MIR371A-201; exon 1

  ENST00000362161 ; MIR371A-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-371b

• hsa-mir-373: chr19: 54291959-54292027 [+]
• hsa-mir-372: chr19: 54291144-54291210 [+]
• hsa-mir-371b: chr19: 54290931-54290996 [-]
• hsa-mir-371a: chr19: 54290929-54290995 [+]

Database links

• ENTREZGENE: 100616185;MIR371B

Mature sequence hsa-miR-371b-5p

• Accession: MIMAT0019892
• Sequence: 7 - acucaaaagauggcggcacuuu - 28
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-371b-5p
  • MIRDB:hsa-miR-371b-5p
  • TARGETMINER:hsa-miR-371b-5p

Mature sequence hsa-miR-371b-3p

• Accession: MIMAT0019893
• Sequence: 43 - aagugcccccacaguuugagugc - 65
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-371b-3p
  • MIRDB:hsa-miR-371b-3p
  • TARGETMINER:hsa-miR-371b-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).