Stem-loop sequence hsa-mir-4520b

Accession

MI0017358

Description

Homo sapiens miR-4520b stem-loop

Gene family

MIPF0001272; mir-4520

Stem-loop

-                       cu 
 ccugcguguuuucuguccaaauc  u
 |||||||||||||||||||||||  u
 ggacgcacaaaagacagguuuag  u
u                       uc 

Deep sequencing

2 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr17: 6558768-6558821 [+]
• Overlapping transcripts:

  antisense

  ENST00000582609 ; MIR4520A-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-4520b

• hsa-mir-4520a: chr17: 6558759-6558828 [-]
• hsa-mir-4520b: chr17: 6558768-6558821 [+]

Database links

• ENTREZGENE: 100616466;MIR4520B

Mature sequence hsa-miR-4520b-5p

• Accession: MIMAT0020299
• Sequence: 1 - ccugcguguuuucuguccaa - 20
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4520b-5p
  • MIRDB:hsa-miR-4520b-5p
  • TARGETMINER:hsa-miR-4520b-5p

Mature sequence hsa-miR-4520b-3p

• Accession: MIMAT0020300
• Sequence: 33 - uuuggacagaaaacacgcaggu - 54
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4520b-3p
  • MIRDB:hsa-miR-4520b-3p
  • TARGETMINER:hsa-miR-4520b-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).