Stem-loop sequence hsa-mir-4709

Accession

MI0017342

Description

Homo sapiens miR-4709 stem-loop

Stem-loop

     ucaaca    u -    g    c      u   c 
cugcu      acag g acuu cucu caaugg auc a
|||||      |||| | |||| |||| |||||| |||  
gacga      uguc c ugga gaga guugcu uag g
     ------    u g    g    a      -   u 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 74946836-74946907 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000412344 ; NPC2-003; intron 4

  OTTHUMT00000412345 ; NPC2-002; 3'UTR (exon 4)

  OTTHUMT00000412347 ; NPC2-009; 3'UTR (exon 4)

  OTTHUMT00000412344 ; NPC2-003; intron 4

  OTTHUMT00000412345 ; NPC2-002; 3'UTR (exon 4)

  OTTHUMT00000412347 ; NPC2-009; 3'UTR (exon 4)

  OTTHUMT00000412351 ; NPC2-007; 3'UTR (exon 4)

  OTTHUMT00000412344 ; NPC2-003; intron 4

  OTTHUMT00000412345 ; NPC2-002; 3'UTR (exon 4)

  OTTHUMT00000412347 ; NPC2-009; 3'UTR (exon 4)

  OTTHUMT00000412351 ; NPC2-007; 3'UTR (exon 4)

  OTTHUMT00000412346 ; NPC2-001; 3'UTR (exon 5)

  OTTHUMT00000412348 ; NPC2-008; 3'UTR (exon 5)

  OTTHUMT00000412349 ; NPC2-006; exon 5

  OTTHUMT00000412350 ; NPC2-004; 3'UTR (exon 5)

  OTTHUMT00000412346 ; NPC2-001; 3'UTR (exon 5)

  OTTHUMT00000412348 ; NPC2-008; 3'UTR (exon 5)

  OTTHUMT00000412349 ; NPC2-006; exon 5

  OTTHUMT00000412350 ; NPC2-004; 3'UTR (exon 5)

  OTTHUMT00000412346 ; NPC2-001; 3'UTR (exon 5)

  OTTHUMT00000412348 ; NPC2-008; 3'UTR (exon 5)

  OTTHUMT00000412349 ; NPC2-006; exon 5

  OTTHUMT00000412350 ; NPC2-004; 3'UTR (exon 5)

  ENST00000434013 ; NPC2-003; intron 4

  ENST00000541064 ; NPC2-002; 3'UTR (exon 4)

  ENST00000554482 ; NPC2-009; 3'UTR (exon 4)

  ENST00000434013 ; NPC2-003; intron 4

  ENST00000541064 ; NPC2-002; 3'UTR (exon 4)

  ENST00000554482 ; NPC2-009; 3'UTR (exon 4)

  ENST00000557510 ; NPC2-007; 3'UTR (exon 4)

  ENST00000434013 ; NPC2-003; intron 4

  ENST00000541064 ; NPC2-002; 3'UTR (exon 4)

  ENST00000554482 ; NPC2-009; 3'UTR (exon 4)

  ENST00000557510 ; NPC2-007; 3'UTR (exon 4)

  ENST00000555619 ; NPC2-001; 3'UTR (exon 5)

  ENST00000238633 ; NPC2-008; 3'UTR (exon 5)

  ENST00000553490 ; NPC2-006; exon 5

  ENST00000556009 ; NPC2-004; 3'UTR (exon 5)

  ENST00000555619 ; NPC2-001; 3'UTR (exon 5)

  ENST00000238633 ; NPC2-008; 3'UTR (exon 5)

  ENST00000553490 ; NPC2-006; exon 5

  ENST00000556009 ; NPC2-004; 3'UTR (exon 5)

  ENST00000555619 ; NPC2-001; 3'UTR (exon 5)

  ENST00000238633 ; NPC2-008; 3'UTR (exon 5)

  ENST00000553490 ; NPC2-006; exon 5

  ENST00000556009 ; NPC2-004; 3'UTR (exon 5)

Database links

• ENTREZGENE: 100616211;MIR4709

Mature sequence hsa-miR-4709-5p

• Accession: MIMAT0019811
• Sequence: 9 - acaacagugacuugcucuccaa - 30
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4709-5p
  • MIRDB:hsa-miR-4709-5p
  • TARGETMINER:hsa-miR-4709-5p

Mature sequence hsa-miR-4709-3p

• Accession: MIMAT0019812
• Sequence: 48 - uugaagaggaggugcucuguagc - 70
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4709-3p
  • MIRDB:hsa-miR-4709-3p
  • TARGETMINER:hsa-miR-4709-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).