Stem-loop sequence hsa-mir-3198-2

Accession MI0017335
Description Homo sapiens miR-3198-2 stem-loop
Gene family MIPF0001216; mir-3198
Stem-loop 
    c       a      a     c   -a    u   a 
gacu ugcucuc cuguuc cccag acu  gcag acc g
|||| ||||||| |||||| ||||| |||  |||| |||  
cuga acgagag gguaag ggguc uga  uguc ugg a
    c       a      -     c   gg    u   u
Get sequence
Deep sequencing
22 reads, 9 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr12: 54625181-54625260 [-]
sense
OTTHUMT00000405467 ; CBX5-002; 3'UTR (exon 5)
OTTHUMT00000405467 ; CBX5-002; 3'UTR (exon 5)
OTTHUMT00000405467 ; CBX5-002; 3'UTR (exon 5)
ENST00000209875 ; CBX5-002; 3'UTR (exon 5)
ENST00000209875 ; CBX5-002; 3'UTR (exon 5)
ENST00000209875 ; CBX5-002; 3'UTR (exon 5)
Database links

Mature sequence hsa-miR-3198

Accession MIMAT0015083
Sequence

49 -  

guggaguccuggggaauggaga

 - 70

Get sequence
Deep sequencing 44 reads, 9 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).