Stem-loop sequence hsa-mir-4685

Accession

MI0017317

Description

Homo sapiens miR-4685 stem-loop

Stem-loop

-     c     uu   gu    ca   uu    gu 
 uagcc agggc  gga  gggg  agg  guug  g
 ||||| |||||  |||  ||||  |||  ||||   
 aucgg ucccg  ccu  uccc  ucc  cggu  a
g     -     -u   --    uc   uu    au 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr10: 100191049-100191117 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000049768 ; HPS1-001; intron 1

  OTTHUMT00000049771 ; HPS1-004; intron 1

  OTTHUMT00000049781 ; HPS1-014; intron 1

  OTTHUMT00000049768 ; HPS1-001; intron 1

  OTTHUMT00000049771 ; HPS1-004; intron 1

  OTTHUMT00000049781 ; HPS1-014; intron 1

  OTTHUMT00000049768 ; HPS1-001; intron 1

  OTTHUMT00000049771 ; HPS1-004; intron 1

  OTTHUMT00000049781 ; HPS1-014; intron 1

  OTTHUMT00000049769 ; HPS1-002; intron 5

  OTTHUMT00000049770 ; HPS1-003; intron 5

  OTTHUMT00000049769 ; HPS1-002; intron 5

  OTTHUMT00000049770 ; HPS1-003; intron 5

  OTTHUMT00000049769 ; HPS1-002; intron 5

  OTTHUMT00000049770 ; HPS1-003; intron 5

  OTTHUMT00000049776 ; HPS1-009; intron 6

  OTTHUMT00000049777 ; HPS1-010; intron 6

  OTTHUMT00000049778 ; HPS1-011; intron 6

  OTTHUMT00000049779 ; HPS1-012; intron 6

  OTTHUMT00000049776 ; HPS1-009; intron 6

  OTTHUMT00000049777 ; HPS1-010; intron 6

  OTTHUMT00000049778 ; HPS1-011; intron 6

  OTTHUMT00000049779 ; HPS1-012; intron 6

  OTTHUMT00000049776 ; HPS1-009; intron 6

  OTTHUMT00000049777 ; HPS1-010; intron 6

  OTTHUMT00000049778 ; HPS1-011; intron 6

  OTTHUMT00000049779 ; HPS1-012; intron 6

  ENST00000478087 ; HPS1-001; intron 1

  ENST00000470095 ; HPS1-004; intron 1

  ENST00000414009 ; HPS1-014; intron 1

  ENST00000478087 ; HPS1-001; intron 1

  ENST00000470095 ; HPS1-004; intron 1

  ENST00000414009 ; HPS1-014; intron 1

  ENST00000478087 ; HPS1-001; intron 1

  ENST00000470095 ; HPS1-004; intron 1

  ENST00000414009 ; HPS1-014; intron 1

  ENST00000498219 ; HPS1-003; intron 5

  ENST00000480020 ; HPS1-002; intron 5

  ENST00000498219 ; HPS1-003; intron 5

  ENST00000480020 ; HPS1-002; intron 5

  ENST00000498219 ; HPS1-003; intron 5

  ENST00000480020 ; HPS1-002; intron 5

  ENST00000325103 ; HPS1-009; intron 6

  ENST00000361490 ; HPS1-011; intron 6

  ENST00000467246 ; HPS1-012; intron 6

  ENST00000338546 ; HPS1-010; intron 6

  ENST00000407891 ; HPS1-201; intron 6

  ENST00000325103 ; HPS1-009; intron 6

  ENST00000361490 ; HPS1-011; intron 6

  ENST00000467246 ; HPS1-012; intron 6

  ENST00000338546 ; HPS1-010; intron 6

  ENST00000407891 ; HPS1-201; intron 6

  ENST00000325103 ; HPS1-009; intron 6

  ENST00000361490 ; HPS1-011; intron 6

  ENST00000467246 ; HPS1-012; intron 6

  ENST00000338546 ; HPS1-010; intron 6

Database links

• ENTREZGENE: 100616482;MIR4685

Mature sequence hsa-miR-4685-5p

• Accession: MIMAT0019771
• Sequence: 4 - cccagggcuuggaguggggcaagguu - 29
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4685-5p
  • MIRDB:hsa-miR-4685-5p
  • TARGETMINER:hsa-miR-4685-5p

Mature sequence hsa-miR-4685-3p

• Accession: MIMAT0019772
• Sequence: 48 - ucucccuuccugcccuggcuag - 69
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4685-3p
  • MIRDB:hsa-miR-4685-3p
  • TARGETMINER:hsa-miR-4685-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).